PDB_id  Title and Release Data
2YRT

Solution structure of the CHORD domain of human CHORD-containing protein 1
Release Date: 2008-04-08  Classification: Transcription

2YRU

Solution structure of mouse Steroid receptor RNA activator 1 (SRA1) protein
Release Date: 2008-04-08  Classification: Apoptosis

2YRV

Solution structure of the RBB1NT domain of human RB(retinoblastoma)-binding protein 1
Release Date: 2008-04-08  Classification: Transcription 

1X68

Solution structures of the C-terminal LIM domain of human FHL5 protein
Release Date: 2005-11-17  Classification: Protein Binding

1X6A

Solution structures of the second LIM domain of human LIM-kinase 2 (LIMK2)
Release Date: 2005-11-17  Classification: Protein Binding

2COB

Solution structures of the HTH domain of human LCoR protein
Release Date: 2005-11-17  Classification: DNA Binding Protein  

1X52

Solution structures of the C-terminal domain of the human Pelota homolog (CGI-17)
Release Date: 2005-11-15  Classification: Protein Binding 

1X57

Solution structures of the HTH domain of human EDF-1 protein
Release Date: 2005-11-15  Classification: DNA Binding Protein

1X58

Solution structures of the myb-like DNA binding domain of 4930532D21Rik protein
Release Date: 2005-11-15  Classification: Structural Genomics/Unknown Function

1X59

Solution structures of the WHEP-TRS domain of human histidyl-tRNA synthetase
Release Date: 2005-11-15  Classification: Protein Binding

1WH2

Solution structure of the GYF domain of a hypothetical protein from Arabidopsis thaliana
Release Date: 2004-11-28  Classification: Structural Genomics/Unknown Function  

1WH4

Solution structure of the DEATH domain of Interleukin-1 receptor-associated kinase4 (IRAK4) from Mus musculus
Release Date: 2004-11-28  Classification: Transferase 

1WH6

Solution structure of the second CUT domain of human Homeobox protein Cux-2
Release Date: 2004-11-28  Classification: Transcription

1WH8

Solution structure of the third CUT domain of human Homeobox protein Cux-2
Release Date: 2004-11-28  Classification: Transcription

1WH9

Solution structure of the KH domain of human ribosomal protein S3
Release Date: 2004-11-28  Classification: Ribosome

1UKX

Solution structure of the RWD domain of mouse GCN2 
Release Date: 2004-08-03  Classification: Transferase   
Citation:
Solution structure of the RWD domain of the mouse GCN2 protein.
Nameki, N., Yoneyama, M., Koshiba, S., Tochio, N., Inoue, M., Seki, E., Matsuda, T., Tomo, Y., Harada, T., Saito, K., Kobayashi, N., Yabuki, T., Aoki, M., Nunokawa, E., Matsuda, N., Sakagami, N., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Osanai, T., Tanaka, A., Arakawa, T., Carninci, P., Kawai, J., Hayashizaki, Y., Kinoshita, K., Güntert, P., Kigawa, T., Yokoyama, S.
Protein Sci. 13: 2089-2100, (2004)

1J3T

Solution structure of the second SH3 domain of human intersectin 2 (KIAA1256)
Release Date: 2004-06-15  Classification: Endocytosis/exocytosis

1UJV

Solution structure of the second PDZ domain of human membrane associated guanylate kinase inverted-2 (MAGI-2)
Release Date: 2004-02-11  Classification: Signaling Protein

1N27

Solution structure of the PWWP domain of mouse Hepatoma-derived growth factor, related protein 3
Release Date: 2003-12-23  Classification: Hormone/growth Factor  
Citation
Solution structure of the PWWP domain of the hepatoma-derived growth factor family.
Nameki, N., Tochio, N., Koshiba, S., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Fujikura, Y., Saito, M., Ikari, M., Watanabe, M., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Tanaka, A., Hayashizaki, Y., Güntert, P., Kigawa, T., Yokoyama, S.
Protein Sci. 14: 756-764 (2005)

1J1H

Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus
Release Date: 2003-02-11  Classification: RNA Binding Protein  
Citation
Solution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus.
Someya, T., Nameki, N., Hosoi, H., Suzuki, S., Hatanaka, H., Fujii, M., Terada, T., Shirouzu, M., Inoue, Y., Shibata, T., Kuramitsu, S., Yokoyama, S., Kawai, G.
FEBS Lett. 535: 94-100 (2003)

PDB_code
主に本大学で構造決定したもの
PDB_id  Title and Release Data
New!
2RTX

Nameki, N., Enomoto, M., Kogure, H.,Tochio, N., Güntert, P.
Solution structure of the GGQ domain of YaeJ protein from Escherichia coli
Release Date: 2013-12-25  Classification: Translation
Citation:
Identification of residues required for stalled-ribosome rescue in the codon-independent release factor YaeJ.
Nucleic Acids Res. 2014 Mar 1;42(5):3152-63.

2RSM Enomoto, M., Tochio, N., Tomizawa, T., Koshiba, S., Güntert, P., Kigawa, T., Yokoyama, S., Nameki, N.
Solution structure of the mitochondrial disease-related protein C12orf65 (ICT2)
Release Date: 2012-08-08  Classification: Translation
Citation:
Solution structure and siRNA-mediated knockdown analysis of the mitochondrial disease-related protein C12orf65.
Proteins. 2012 Nov;80(11):2629-42.
2RQ9 Enomoto, M., Xiang, L., Ishii, T., Tochio, N., Hosoda, K., Inoue, Y., Nameki, N., Wakamatsu, K.
Solution structure of human acidic fibroblast growth factor (aFGF) in the presence of a protein stabilizer NDSB-new
Release Date: 2010-03-16  Classification: Protein Binding
 2RPR Enomoto, M., Saito, K., Tochio, N., Kigawa, T., Yokoyama, S., Nameki, N.
Solution structure of the fifth FLYWCH domain of FLYWCH-type
zinc finger-containing protein 1
Release Date: 2009-08-04  Classification: Metal Binding Protein
 1J26 Nameki, N., Kigawa, T., Koshiba, S., Kobayashi, N., Tochio, N., Inoue, M., Yokoyama, S.
Solution structure of a putative peptidyl-tRNA hydrolase domain in a mouse hypothetical protein
Release Date: 2004-06-01  Classification: Translation
Citation:
Solution structure of the catalytic domain of the mitochondrial protein ICT1 that is essential for cell vitality.
J Mol Biol. 2010 Nov 26;404(2):260-73.
Protein 3000 project (RIKEN Structural Genomics/Proteomics Initiative (RSGI))で
構造決定行われたもの
(Authors: Nameki et al.)

NMR  2E10, 2DB9, 2CUD, 1WGP, 1UHR, 1V6B
X-ray  1J2B, 1IQ8, 1IT7, 1IT8
Others